HumanOmni2.5-8 BeadChip Support
Specifications
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HumanOmni2.5-8 BeadChip Product Information
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| Feature | Description | ||||||
| Number of Markers | 2,379,855 | ||||||
| Number of Samples | 8 |
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| DNA requirement | 200 ng | ||||||
| Assay | Infinium® LCG |
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| Instrument Support | HiScanSQ, iScan | ||||||
| Sample Throughput* | 1,067 samples / week | ||||||
| Scan Time / Sample | 6.5 min (HiScan) 11.4 min (iScan) |
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| % Variation Captured (r2 > 0.8) |
1kGP** MAF> 5% |
1kGP** MAF > 1% |
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| CEU | 0.83 | 0.73 | |||||
| CHB + JPT | 0.83 | 0.73 | |||||
| YRI | 0.65 | 0.51 | |||||
| Data Performance | Value†/Product Specification | ||||||
| Call Frequency | 99.65% / > 99% avg. | ||||||
| Reproducibility | 99.99% /> 99.9% | ||||||
| Log R Deviation | 0.12 / <0.30‡ | ||||||
| Spacing | Mean / Medium / 90th% | ||||||
| Spacing (kb) | 1.19 / 0.64 / 2.76 | ||||||
| Marker Categories | Number of Markers | ||||||
| Number of SNPs with 10kb of RefSeq |
1,231,382 | ||||||
| MHC / ADME |
19,238 / 27,335 |
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| Sex Chromosome (X / Y / PAR Loci) |
55,208 / 2,561 / 418 | ||||||
| Mitochondrial |
256 |
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*Estimate assumes one HiScan system, one AutoLoader2, one Tecan Robot, and a five-day work week. |
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| ** Compared against June 2011 1kGP data release |
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| †Values are derived from genotyping 470 reference samples. | |||||||
| ‡ Value expected for typical projects, excluding tumor samples or any samples prepared not following standard Illumina protocols. | |||||||