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Intro_appMD_P
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The BaseSpace® mtDNA Variant Processor v1.0 App performs alignment and variant calling of samples against a reference mitochondrial DNA (mtDNA) genome. The app can analyze any part of the full circular genome using quality and coverage thresholds information. The app produces BAM and VCF output files. You can use the BAM files for alignment research with third party tools. You can view the analysis results of the VCF files in the mtDNA Variant Analyzer App.