Documentation

iScan Control Software Release Notes

Summary of changes introduced in iScan Control Software (ICS) v3.4

AutoLoader 2.x User Guide (15015394)

Instructions for using the AutoLoader 2.x.

Infinium Plate Heat Sealing Best Practices Video

This video demonstrates the heat sealing technique recommended for all Infinium assays.

DMAP Decode File Client User Guide (11337856 C)

Infinium Karyomapping Assay Protocol Guide

Instructions for performing the Infinium karyomapping assay protocol.

Illumina Automation Control Release Notes

Summary of changes introduced in Illumina Automation Control (IAC) v6.0.

VeraCode ADME Assay Guide (15007510)

Instructions for performing the VeraCode ADME assay.

BeadStation 500G System Manual (11165222 B)

This download contains the user guide for BeadStation 500G.

GoldenGate Indexing Assay Lab Tracking Form for Universal BeadChip, 8x192 or 4x384 Index (15009926)

Interactive form for recording steps during the GoldenGate Indexing assay.

CytoChip Microarray Oligo Reference Guide

Instructions for performing the CytoChip Oligo protocol using CytoChip Focus 4x180K and 8x60K Microarray Kits and the CytoChip ISCA, CytoChip Oligo, and CytoChip Oligo SNP Microarray Kits.

Infinium LCG Quad Assay Lab Tracking Form (15025911)

Lab tracking form for the Infinium LCG Quad assay.

Infinium HD Assay Ultra Manual Experienced User Card (11328095)

Experienced-level instructions for performing the Infinium HD assay ultra manual protocol.

MicroRNA Expression Profiling Assay for BeadChips Experienced User Card

Experienced-level instructions for performing the MicroRNA Expression Profiling assay for BeadChips.

Infinium CytoSNP-850K Assay Experienced User Card

Experienced-level instructions for performing the CytoSNP-850K assay protocol.

Infinium Multi-Use LCG Assay Lab Tracking Form (15023287)

Lab tracking form for the Infinium Multi-Use LCG assay.

Beeline Software v1.0 User Guide

Instructions for using Beeline Software v1.0.

KaryoStudio v1.4 User Guide (11328837)

Instructions for using KaryoStudio Software v1.4 to analyze detected regions, match results to known variants, and generate a cytogenetics report.

VeraCode Vortex Incubator User Guide (11251876 A)

This download contains the Vortex Incubator User Guide for use with VeraCode Assays.

DASL Assay System Manual (11175105)

Instructions for performing the DASL assay.

Golden Gate Meth for Vera Code Lab Tracking Form (11312739)

Lab tracking form for the Golden Gate Meth for Vera Code.

Infinium HD Assay Ultra Protocol Guide (11328087)

Instructions for performing the Infinium HD Ultra assay.

iControlDB Download Client User Guide (11297399)

Instructions for installing the download client and downloading data from iControlDB.

Infinium II Assay HC Two-Sample Manual Experienced User Card (11280802)

Experienced-level instructions for performing the Infinium II assay HC Two-Sample protocol.

Best Practices for Infinium Assays (370-2009-010)

Best practices for performing Infinium assays.

DASL Assay System Manual Errata (11216069)

Instructions for performing the DASL assay.

Lab tracking form for the Infinium HD assay Super.

Infinium HD Assay Super Lab Tracking Form (11327261)

KaryoStudio Software v1.4 Release Notes (11328870 D)

This download contains the release notes for version 1.4 of the KaryoStudio Software.

Infinium II Assay Experienced User Card, Multi-Sample, Automated Protocol (11208018)

Experienced-level instructions for performing the Infinium II Multi-Sample assay automated protocol.

Infinium HD Assay Gemini Manual Protocol (11311015)

Experienced-level instructions for performing the Infinium HD assay.

MCS3 Expiration Date Change

Product Quality Notification for Recent DASL Purchases.

HiScanSQ Pausing a Sequencing Run to Scan BeadChips (15023459 A)

Instructions for pausing a sequencing run on the HiScanSQ.

GoldenGate Assay for Methylation Multi-Use Automated Experienced User Guide (11233096)

Experienced-level instructions for performing the GoldenGate assay for methylation.

VeraCode ADME Core Panel Assay Lab Tracking Form (15009588)

Lab tracking form for the VeraCode ADME Core Panel assay.

GoldenGate Methylation Lab Tracking Worksheet (11237396 A)

This download contains the GoldenGate Methylation Lab Tracking Worksheet.

Illumina AutoLoader2 Quick Reference Card (11308641)

Overview of scanning process using AutoLoader2 with iScan.

Whole-Genome Gene Expression Direct Hybridization Assay (11322187)

Experienced-level instructions for performing the Whole-Genome Gene Expression Direct Hybridization assay.

Infinium HD FFPE Restore Protocol (15014614 C)

Instructions for performing the Infinium HD FFPE DNA restoration protocol.

Infinium II Assay HC Two-Sample Automated Experienced User Card (11280811)

Experienced-level instructions for performing the Infinium II assay.

Infinium II Assay Multi-Sample Lab Tracking Form (11237695 A)

This download contains the lab tracking form for the multi-sample Infinium II Assay.

GoldenGate Workflow Information (370-2010-015)

Summary of workflow requirements and estimated scan times for GoldenGate assays.

Infinium HD Methylation Assay Automated Protocol Experienced User Card

Experienced-level instructions for performing the Infinium HD Methylation protocol for the Infinium HumanMethylation450K and Infinium MethylationEPIC array.

Infinium HD Assay for Methylation Lab Tracking Form

Interactive form for tracking lot numbers, samples, and times when performing the Infinium HD Methylation assay.

Infinium HD Methylation Assay Protocol Guide

Instructions for performing the Infinium HD Methylation protocol for the Infinium HumanMethylation450K and Infinium MethylationEPIC array using the manual method or the automated method.

Infinium HD Ultra Assay Lab Tracking Form

Lab tracking form for the Infinium HD Ultra.

CytoChip Microarray Reference Guide

Instructions for use with the CytoChip Focus Constitutional Microarray Kit.

GoldenGate Manual EUC for Universal BeadChips (15004070)

Instructions for using the GoldenGate Genotyping manual protocol.

Infinium LCG Assay Protocol Guide (15023139)

Instructions for performing the Infinium protocol using the manual method or the automated method.

Whole-Genome Gene Expression Direct Hybridization Assay Guide ( 11322355)

Instructions for performing the Whole-Genome Gene Expression Direct Hybridization assay.

Whole-Genome Gene Expression Direct Hybridization Assay Lab Tracking Form (11327279)

Interactive form for recording steps during the Whole-Genome Gene Expression Direct Hybridization assay.

iScan System Quick Reference Guide

Instructions for using the iScan.

New 12-sample Universal BeadChip Information (11326938)

Summary of changes to the 12-Sample Universal BeadChip.

BeadArray Controls Reporter Software Guide

Software guide for the BeadArray Controls Reporter, including an analysis overview, output file descriptions, sample sheet specifications, and troubleshooting.

GenomeStudio Genotyping Module Workflow for the GoldenGate Indexing Assay (15009829)

Instructions for performing GenomeStudio Genotyping Module for the GoldenGate Indexing assay.

Infinium LCG Workflows Overview Video Version 2

This short video describes the new Infinium LCG assay workflows by reviewing changes in the new workflows compared to the existing Infinium HD assay workflows.

WGDASL HT Lab Tracking Form (15018212)

Lab tracking form for the Whole-Genome Gene Expression DASL HT assay.

Karyomapping: Phasing Single Gene Defects Technical Guide

An introduction to the Infinium karyomapping protocol for phasing single gene defects.

Infinium HTS Assay Protocol Guide (15014614)

Instructions for performing the Infinium HTS assay Protocol.

Infinium HD Assay Gemini Protocol Guide (11311007)

Instructions for performing the Infinium HD Gemini assay.

Illumina LIMS User Guide (15000395)

Instructions for using Illumina LIMS to manage projects and tasks, generate reports, and track history.

GoldenGate Genotyping Assay Experienced User Card, Manual Protocol for Universal Array Matrix (15005074)

Experienced-level instructions for performing the GoldenGate Genotyping assay.

BlueFish Protocol Experienced User Card

Experienced-level instructions for hybridizing BlueFish probes to metaphase spreads.

WGDASL HT Experienced User Card

Experienced-level instructions for using the WGDASL HT.

GoldenGate GT for VeraCode Lab Tracking Form (11312721)

Lab tracking form for the GoldenGate GT for VeraCode.

Infinium HTS Assay Manual Lab Tracking Form (15047409)

Manual lab tracking form for the Infinium HTS assay.

CytoChip Summary Protocol Experienced User Card

Experienced-level instructions for preparing samples using the CytoChip Focus Constitutional Microarray Kit.

Infinium HD FFPE QC Assay Protocol Guide (15020981)

Instructions for determining whether DNA samples are candidates for the Infinium HD FFPE genotyping or methylation assay.

iScan System Site Prep Guide

The lab setup and site prep guide provides important information about setting up a lab for the iScan system, including instrument dimensions, lab space requirements, electrical requirements, and user-supplied consumables.

DASL Assay Manual Protocols Experienced User Card (11175148)

Experienced-level instructions for performing the DASL assay.

Infinium HD FFPE Methylation Assay Manual Protocol Experienced User Card (15027310)

Experienced-level instructions for performing the Infinium HD FFPE assay.

MicroRNA Expression Profiling Assay for SAMs Experienced User Card (11317311)

Experienced-level instructions for performing the MicroRNA Expression Profiling assay.

Infinium Workflow Settings and Specifications (370-2010-014)

Summary of workflow requirements and estimated scan times for Infinium BeadChips.

Illumina Infinium HD FFPE Assay Automated Protocol Experienced User Card (15021524)

Experienced-level instructions for performing the Infinium HD FFPE assay automated protocol.

GoldenGate Auto EUC for Universal BeadChips (15004069)

Experienced-level instructions for performing the GoldenGate Genotyping assay, Automated.

Autoloader Single BeadArray Reader Configuration Quick Reference Card (11219892)

Instructions for setting up and configuring the Autoloader Single BeadArray Reader.

MicroRNA Expression Profiling Assay for BeadChips Lab Tracking Form (11317345)

Lab tracking form for the MicroRNA Expression Profiling assay for BeadChips.

Infinium HTS Assay Experienced User Card, Automated Protocol (11311023)

Experienced-level instructions for performing the Infinium HTS assay.

Infinium Karyomapping Assay Lab Tracking Form

Lab tracking form for the Infinium karyomapping assay.

DASL for VeraCode Lab Track Form (11312747)

Lab tracking form for DASL for VeraCode.

24sure Microarray Single Channel Protocol Experienced User Card

Experienced-level instructions for preparing samples using the 24sure Microarray Kit and Single Channel protocol.

BeadStation 500G Manual Experienced User Card (11171817)

Experienced-level instructions for using the BeadStation 500G.

Infinium HD Ultra Assay Experienced User Card, Automated Protocol (11328108)

Experienced-level instructions for performing the Infinium HD Ultra assay automated protocol.

AutoLoader User Guide (11219711 A)

This download contains the user guide for AutoLoader, which works in conjunction with the BeadArray Reader.

GoldenGate Genotyping Assay for Universal BeadChip Lab Tracking Form (15004071)

Lab tracking form for GoldenGate Genotyping assay for Universal BeadChip.

Infinium HD Assay Super Manual Protocol Experienced User Card (11322312)

Experienced-level Lab tracking form for the Infinium HD assay.

New TeFlow Components in the Infinium LCG Assay (15024058)

Ordering information for the TeFlow components used in the Infinium LCG assay.

Whole-Genome Gene Expression DASL Assay Lab Tracking Form (11327210)

Lab tracking form for the Whole-Genome Gene Expression DASL assay.

VeraCode and BeadXpress Equipment Materials and Reagents Checklist ( 11275659)

List of equipment, materials, and reagents required for VeraCode and BeadXpress.

KaryoStudio Software v1.3 Release Notes (11328870 C)

This download contains the release notes for version 1.3 of the KaryoStudio Software.

AutoLoader Dual BeadArray Reader Configuration Quick Reference Card (11219905)

Instructions for configuring the AutoLoader Dual BeadArray Reader.

Important Customer Information about the Infinium LCG Assay (15024057)

Summary of guidelines and requirements for performing the Infinium LCG assay.

Infinium HD FFPE Methylation Assay Automated Protocol Experienced User Card (15027309)

Experienced-level instructions for performing the Infinium HD FFPE assay.

Infinium HTS Automated Lab Tracking Form (15047410)

Automated lab tracking form for the Infinium HTS assay.

BeadXpress Reader System Manual

This download contains the IVD (U.S.A. only) and RUO versions of the system manual for the BeadXpress Reader and VeraScan software v2.0.

Infinium HD FFPE Assay Experienced User Card, Manual Protocol (15021526)

Experienced-level instructions for performing the Infinium HD FFPE assay manual protocol.

Infinium II Assay Multi-Sample Protocol Guide (11230143)

Instructions for performing the Infinium II Multi-Sample assay.

Infinium Assay Lab Setup and Procedures Guide

Lab requirements and preparation instructions for performing Infinium assays.

HiScanSQ System User Guide (15015392)

Instructions for using the HiScanSQ.

Infinium HTS Assay Experienced User Card, Manual Protocol (15021526)

Experienced-level instructions for performing the Infinium HTS assay manual protocol.

Infinium HD FFPE Lab Tracking Form (15021527)

Lab tracking form for the Infinium HD FFPE.

Bead Array Reader User Guide (11179510)

Instructions for using the Bead Array Reader.

iScan System Guide

The system guide describes instrument components, on-instrument software, the scanning workflow, maintenance procedures, and troubleshooting procedures.

24sure Microarray Dual Channel Summary Protocol Experienced User Card

Experienced-level instructions for preparing samples using the 24sure+ Microarray Pack and Dual Channel protocol.

Infinium HD Methylation Assay Manual Protocol Experienced User Card

Experienced-level instructions for performing the Infinium HD Methylation protocol for the Infinium HumanMethylation450K and Infinium MethylationEPIC assay.

WGDASL HT Assay Guide (15018210)

Instructions for performing the WGDASL HT assay.

Infinium II Assay Two-Sample Lab Tracking Worksheet (11237708)

Interactive form for recording steps during the Infinium II assay.

Infinium LCG Assay Lab Tracking Form (15023142)

Lab tracking form for the Infinium LCG assay.

Thermocycler Control Software User Guide (15004310)

Instructions for using the Thermocycler Control Software.

Automated GoldenGate Genotyping Assay Lab Track Sheet (11295203)

iScan System Quick Reference Card

Instructions for starting up and shutting down the iScan.

CytoChip Oligo Summary Protocol Experienced User Card

Experienced-level instructions for preparing samples using the CytoChip Focus 4x180K and 8x60K Microarray Kits and the CytoChip ISCA, CytoChip Oligo, and CytoChip Oligo SNP Microarray Kits.

Infinium HD Assay for Methylation Lab Tracking Form (15020316)

Instructions for performing the Infinium protocol using the manual method or the automated method.

MicroRNA SAM Lab Track Form (11317337)

Lab tracking form for the microRNA Expression Profiling assay for SAMs.

DASL Gene Expression Assay for VeraCode Manual Protocol (11312780)

Experienced-level instructions for performing the DASL Gene Expression assay for VeraCode.

Infinium Multi-User LCG Assay Protocol Guide (15023284)

Instructions for performing the Infinium protocol using the manual method or the automated method.

GoldenGate Indexing Assay Lab Tracking Form for Universal BeadChip, 16x96 Index (15006939)

Interactive form for recording steps during the GoldenGate Indexing assay.

GoldenGate Genotyping Assay for VeraCode Experienced User Card, Manual Protocol (11312755)

Instructions for performing the GoldenGate Genotyping assay for VeraCode.

Infinium II Assay Two-Sample HC Protocols (11280749)

Instructions for performing the Infinium II Two-Sample assay.

iScan System Safety and Compliance Guide

Safety information and product compliance statements for the iScan.

Infinium II Multi-Sample Assay Experienced User Card, Manual Protocol (11208000)

Experienced-level instructions for performing the Infinium II Multi-Sample assay.

Illumina LIMS Project Manager Guide (15000396)

Instructions for using Illumina LIMS to manage projects and tasks, generate reports, and track history.

WG-DASL Assay Guide (11322443 B)

This download contains the user guide for performing the Whole-Genome Gene Expression DASL Assay.

VeraCode Bead Kitting System User Guide (11248028)

Instructions for kitting and storing VeraCode beads, as well as cleaning the bead kitting system.

Whole-Genome Gene Expression DASL Assay (11322347)

Instructions for performing the Whole-Genome Gene Expression DASL assay.

KaryoStudio Software v1.3 Release Notes (11328870)

Summary of changes introduced in KaryoStudio Software v1.3.

New 12-sample DASL Universal BeadChip Information (11326911)

Overview of changes introduced with the DASL Universal BeadChip.

MicroRNA Expression Profiling Assay Guide (11317302)

Instructions for performing the MicroRNA Expression Profiling assay.

Infinium LCG Quad Assay Guide (15025908)

Instructions for performing the Infinium LCG Quad assay.

VeraCode ADME Software Release Notes (15036802)

Summary of instructions for using the VeraCode ADME Software.

GoldenGate Genotyping Assay for VeraCode Automated Protocol Experienced User Card (11312763)

Experienced-level instructions for performing the GoldenGate Genotyping assay for VeraCode.

GoldenGate Automation DASL Assay Production Tracking Worksheet (11194390)

Production tracking form for GoldenGate Automation DASL assay.

Hybridization Oven System Guide (11317134)

Instructions for performing the Hybridization Oven with Infinium assays.

Infinium Multi-User LCG Assay Automated Protocol Experienced User Card (15023286)

Experienced-level instructions for performing the Infinium Multi-User LCG assay.

Infinium HD Gemini Assay Experienced User Card, Automated Protocol (11311023)

Experienced-level instructions for performing the Infinium HD Gemini assay.

Infinium Multi-Use LCG Assay Manual Protocol Experienced User Card (15023285)

Experienced-level instructions for performing Infinium Multi-Use LCG assay.

Infinium HD Super Assay Protocol Guide ( 11322427)

Instructions for performing the Infinium HD Super assay.

Infinium CytoSNP-850K Protocol Guide

Instructions for performing the Infinium CytoSNP-850K Assay Protocol.

Infinium LCG Assay Automated Protocol Experienced User Card (15023141)

Experienced-level instructions for performing the Infinium LCG assay automated protocol.

Illumina Infinium LCG Assay Manual Protocol Experienced User Card (15023140)

Experienced-level instructions for performing the Infinium LCG assay manual protocol.

Inf HD Gemini Lab Tracking Form (11311031)

Lab tracking form for the Inf HD Gemini assay.

Infinium Assay Glass Cleaning Protocol (11316641)

GoldenGate Indexing Assay Guide (15006937)

Instructions for performing the GoldenGate Indexing assay.

Infinium LCG Quad Assay Manual Experienced User Card (15025909)

Experienced-level instructions for using the Infinium LCG Quad.

GoldenGate Genotyping Assay Automated Protocol Experienced User Card (11295191)

Experienced-level instructions for performing the GoldenGate Genotyping assay.

Universal BC Booklet ( 11325425)

Instructions for performing the MicroRNA GoldenGate Methylation and DASL Gene Expression assays.

Infinium HD Super Assay Experienced User Card, Automated Protocol (11322291)

Experienced-level instructions for performing the Infinium HD Super assay.

GoldenGate Assay for Methylation System Guide (11228975)

Instructions for performing the GoldenGate assay for methylation protocol performing the manual method or the automated method.

Beeline Software v2.0.1 User Guide

Instructions for using Beeline Software v2.0.1.

Lab tracking form for the Whole-Genome Gene Expression DASL HT assay (11233109).

Experienced-level instructions for performing the GoldenGate Methylation assay.

Infinium HD FFPE Assay Protocol Guide (15021525)

Instructions for performing the Infinium HD FFPE assay.

DASL Assay Automation Experienced User Card (11195173)

Experienced-level instructions for performing the DASL assay.

GoldenGate Genotyping Assay Guide (15004065)

Instructions for performing the GoldenGate Genotyping assay

DASL Assay Laboratory Process Flow (11175130)

Overview of Gene Expression workflow using Sentrix arrays.

Infinium LCG Quad Assay Automated Protocol Experienced User Card (15025910)

Experienced-level instructions for performing the Infinium LCG Quad assay.

New 12-sample miRNA Universal BeadChip Information (11326920)

Information about changes to the miRNA Universal BeadChip protocol.

Product Documentation