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SNV, Deletion, and Insertion Summaries
The Whole Genome Sequencing app summary report lists separate tables for SNVs, deletions, and insertions. The Ts/Tv Ratio is only available in the SNV summary.
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Statistic |
Definition |
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Sample ID |
Sample ID from input |
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Total Passing |
The total number of variants present in the data set that passed the variant quality filters. |
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% in dbSNP |
100*(number of variants in dbSNP/Number of variants) |
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Het/Hom Ratio |
Number of heterozygous variants/Number of homozygous variants. |
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Ts/Tv Ratio |
Transition rate of SNVs that pass the quality filters divided by the transversion rate of SNVs that pass the quality filters. Transitions are interchanges of purines (A, G) or of pyrimidines (C, T). Transversions are interchanges between purine and pyrimidine bases (for example, A to T). |
For Research Use Only. Not for use in diagnostic procedures.