BaseSpace
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  • Topics

    Overview

    • Software Overview
    • What's New
    • Data Model
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    • BaseSpace Apps

    Automate

    • Data Automation Overview
    • Upload Biosample Workflows
    • Analysis Workflows
    • Automatic Lane QC
    • Automatic Data Aggregation
    • Request Lab Requeue
    • Automatic Analysis QC

    Manage Data

    • Delete Data
    • Import Data
    • Download Files
    • Copy Datasets to Another Project
    • Manual QC
    • Transfer Ownership of Data

    Sequence

    • Sample Sheets
    • Analysis Workflows
    • Automatic Lane QC
    • Fix Indexes
    • Plan Runs
    • Request a Lab Requeue

    Analyze

    • BaseSpace Apps
    • BaseSpace App Help
    • Analysis Workflows
    • Automatic Analysis QC
    • Launching Apps
    • Relaunch Analyses

    Collaborate

    • Access a Workgroup
    • Manage Workgroups
    • Share With Collaborators
    • Get Shared Data
    • Transfer Ownership
    • Share Analyses Results

    Manage Your Account

    • Account Types
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    • Generate Usage Reports
    • Domain Administration
    • Manage Workgroups

    Developer Tools

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    Additional Resources

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    • Documentation & Literature
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How Can We Help You?

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What's New

BaseSpace Developer Tools

Automation

Get Started

  • Introduction
    • Compatible Libraries
    • Workflow Requirements
    • Input Datasets for Analysis
    • Versions
    • Reference Genomes
    • Workflow

Parameters

  • Select Analysis Parameters
    • View Log Details During a Run

Methods

  • Analysis Methods
    • STAR
    • BAM Tagger
    • UMI Counter
    • Cell Filtering
      • Cell Thresholds
      • Estimate Background Noise
      • Calculate Knee Threshold

Output

  • Analysis Output
    • Determine the Quality of your Data
    • View the Metadata of a Completed Analysis
    • View the Parameters of a Completed Analysis
    • View the Raw Output Files of a Completed Analysis
      • Output Files
      • BAM File Format
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Innovative technologies

At Illumina, our goal is to apply innovative technologies to the analysis of genetic variation and function, making studies possible that were not even imaginable just a few years ago. It is mission critical for us to deliver innovative, flexible, and scalable solutions to meet the needs of our customers. As a global company that places high value on collaborative interactions, rapid delivery of solutions, and providing the highest level of quality, we strive to meet this challenge. Illumina innovative sequencing and array technologies are fueling groundbreaking advancements in life science research, translational and consumer genomics, and molecular diagnostics.

For Research Use Only. Not for use in diagnostic procedures (except as specifically noted).
This content supports BaseSpace Sequence Hub release 5.0

Copyright 2017 Illumina, Inc. All rights reserved.