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Reference Genomes

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Human, UCSC hg19

The human reference genome is PAR-Masked, which means that the Y chromosome sequence has the Pseudo Autosomal Regions (PAR) masked (set to N) to avoid mismapping of reads in the duplicate regions of sex chromosomes.

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Human, NCBI GRCh38Decoy

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Chicken, Ensembl Galgal4

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Cow, Ensembl UMD3.1

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Dog, Ensembl CanFam3.1

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Maize, Ensembl AGPv3

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Mouse, UCSC mm9

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Pig, Ensembl Sscrofa10.2

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Rat, UCSC rn4

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Rice, Ensembl IRGSP-1.0

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Sheep, Ensembl Oar_v3.1

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Soybean, Ensembl Gm01

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Custom Genome

Select a FASTA file (.fa or .fasta) as the custom genome for the analysis. If using a custom manifest file at the same time, the Build ID column of the [Probes] section is not validated.

Note

When using a custom manifest file, specify a reference genome in the Build ID column in the [Probes] section. Reference genome names are case-sensitive.

For Research Use Only. Not for use in diagnostic procedures.