Sample Summary Page
The 16S Metagenomics app provides an overview of statistics per sample on the sample pages. You can also download the Summary Report as a PDF.
• | Sample Results |
The sample results section contains a PDF Summary Report that provides information about the classification rate and top sample classifications by taxonomic level. The sample results section also contains a CSV Classification Summary, which shows the aggregate classification counts for the sample.
• | Sample Information |
The Sample Information table provides basic primary analysis information for the sample.
Statistic |
Definition |
---|---|
Number reads PF |
The total number of reads with an index sequence matching this sample that passed quality filtering. |
• | Classification Statistics |
The Classification Statistics section provides information on the classification rate by taxonomic level.
Statistic |
Definition |
---|---|
Reads PF Classified to Taxonomic Level |
The total number of PF reads for this sample that were classified at the given taxonomic level |
% Reads PF Classified to Taxonomic Level |
(# Reads PF Classified to Taxonomic Level / # Reads PF) * 100 |
• | Sunburst Classification Chart |
The sunburst chart presents statistics about the relative abundance and taxonomic hierarchy of classifications in the sample.
Statistic |
Definition |
---|---|
Total reads |
# Reads PF |
% Total reads |
(# Reads PF Classified in taxonomic category / # Reads PF) * 100 |
% [parent category] reads |
(# Reads PF classified in taxonomic category / # Reads PF classified in parent taxonomic category) * 100 |
• | Top 20 Classification Results by Taxonomic Level |
The column chart shows a comparison of the relative abundance of classifications at each taxonomic level. The results exclude reads unclassified at that taxonomic level.
Statistic |
Definition |
---|---|
Total reads |
# Reads PF |
% Reads classified to level |
(# Reads PF Classified in taxonomic category / # Reads PF classified to taxonomic level) * 100 |
% total reads |
(# Reads PF classified in taxonomic category / # Reads PF) * 100 |