|
|
|
Versions
The DNA Amplicon app uses the following components.
|
Software |
Version |
|---|---|
|
DNA Amplicon (BaseSpace Workflow) |
1.0.0 |
|
Isas (Analysis Software) |
3.7.13.374+master |
|
Isas Smith-Waterman-Gotoh (Aligner) |
6.2.4.47 |
|
BWA-MEM aligner |
0.7.12-r1039 |
|
SAMtools |
1.2 |
|
Somatic Variant Caller |
5.2.3.6 |
|
Germline Variant Caller |
5.2.3.6 |
|
Illumina Annotation Engine |
1.6.2.0 |
The Somatic Variant Caller and the Germline Variant Caller are part of the Pisces Variant Calling application. For more information, see the Pisces variant calling wiki.
This app was validated with data from the MiSeq, MiniSeq, and NextSeq systems.
For Research Use Only. Not for use in diagnostic procedures.