|
|
|
BWA
The BWA aligner is used to align reads to the whole genome. If an aligned read comes from a target in the manifest, the probe bases are soft-clipped and the XN is set to the target name.
Alignments with a high number of mismatches are filtered from alignment results. Filtered alignments are written in alignment files as unaligned and are not used in variant calling.
For Research Use Only. Not for use in diagnostic procedures.