Cytosine Report (*.CX_report.txt.gz)

The MethylSeq v1.0 app provides a Cytosine Report in a GZIP archive file format (*.CX_report.txt.gz). The unzipped report is generated in a tab-delimited text (TXT) format.

The cytosine report contains methylation status for every cytosine in the genome, including both strands. This report is only generated when you select Enable genome-wide cytosine methylation report for all cytosines in the genome on the input form. See Bismark.

Statistic

Definition

Chromosome

The chromosome.

Position

The genomic position.

Strand

The strand.

Count methylated

The number of C bases that are methylated.

Count unmethylated

The number of C bases that are unmethylated.

C-context

CpG or alternative context.

Trinucleotide context

Trinucleotide context.

 

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