Target Hits File Format
The TargetHitsPerSample_M1.csv file is a tab-delimited file that contains the summary of raw counts.
The first row of the file contains of column headings including sample IDs. The second row is blank for the first seven columns and in the last column has the sample group from the input form for each sample. The following rows contain the values for each column.
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Column Heading |
Description |
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Gene Name |
The name of the gene. |
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Amplicon ID |
The amplicon identifier constructed from the gene name |
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The unique identifier for the |
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Transcript |
The Ensembl transcript ID(s) of the targeted amplicon. |
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Exons |
The exons of the targeted amplicon. |
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Off Target |
TRUE if the entry is a predicted off-target. FALSE otherwise. Predicted off-targets are based on the probe sets of the on-targets. |
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Target Type |
The type of this amplicon target. Possible target types are:
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Sample ID |
Aligned count for all transcripts for this sample. There is one column for each sample using this manifest. |