Application Requirements
The following files should be uploaded to a project folder in BaseSpace Sequence Hub via the GUI or BaseSpace CLI prior to running the app.
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Fasta file in FA or FASTA format. |
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[Optional] Custom SAM liftover file in SAM format. |
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If the Fasta file contains alternate contigs, a SAM liftover file is required or the application will fail. The app provides the following SAM liftover files for users: |
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[Optional] GTF Annotation File in GZIP format. |
NOTE
Access to the reference genomes created by this app is dependent on the account in which the genome was created. Reference genomes created on a personal account are only available to the owner of that account. Reference genomes created with a workgroup account are accessible to all users within that workgroup.