|
|
|
Output Files
The Output Files page provides access to the output files for each sample analysis. The following is the complete list of output files.
|
File Name |
Source |
Description |
|
Pedigree.vcf.gz |
Strelka |
SNV, indel calls, and gVCF (including reference calls) for each member of the pedigree, in VCF 4.1 format. |
|
Pedigree.vcf.gz.tbi |
||
|
SampleName_S#.genome.vcf.gz |
||
|
SampleName_S#.genome.vcf.gz.tbi |
||
|
SampleName_S#.vcf.gz |
||
|
SampleName_S#.vcf.gz.tbi |
||
|
Pedigree.SV.vcf.gz |
Manta and Canvas |
SV calls for the pedigree |
|
Pedigree.SV.vcf.gz.tbi |
||
|
SampleName_S#.CNV.CoverageAndVariantFrequency.txt |
Canvas |
CNV calls and related data |
|
SampleName_S#.CNV.partitioned |
||
|
SampleName_S#.CNV.VFResults.txt.gz |
||
|
Pedigree.json.gz |
Illumina Annotation Engine |
Variant annotations |
|
Pedigree.SV.json.gz |
||
|
SampleName_S#.json.gz |
||
|
SampleName_S#.SV.json.gz |
||
|
SampleName_S#.summary.csv |
Reporting |
High-level metrics for each sample |
|
Pedigree.report.pdf |
Summary report on the pedigree |
|
|
Pedigree.report.html |
For Research Use Only. Not for use in diagnostic procedures.