Analysis Info
This app provides an overview of the analysis on the Analysis Info page.
A brief description of the metrics is below.
Log Files
Clicking the Log Files link on the Analysis Info page provides access to Isaac Enrichment app log files.
The following files log information to help follow data processing and debugging:
|
•
|
CompletedJobInfo.xml: Contains information about the completed job. |
|
•
|
EnrichmentStatistics.xml: Contains statistics about the completed job. |
|
•
|
IlluminaAppsService.log.copy: Wrapper log file containing information about communication (get and post requests) between BaseSpace and AWS. |
|
•
|
Logging.zip: Contains all detailed workflow log files for each step of the workflow. |
|
•
|
output-{timestamp}.log: Shows the raw console output from the Enrichment app. |
|
•
|
SampleSheet.csv: Sample sheet. |
|
•
|
SampleSheetUsed.csv: A copy of the sample sheet, generated at the end of a run. |
|
•
|
spacedock-{timestamp}.log: Shows console output from the SpaceDock and BaseSpace communication and input/output file staging. |
|
•
|
spacedock-infrastructure-{timestamp}.log: Log file used for debugging. |
|
•
|
WorkflowError.txt: Workflow standard error output (contains errors messages created while running the workflow). |
|
•
|
WorkflowLog.txt: Workflow standard output (contains details about workflow steps, command line calls with parameters, timing, and progress). |
The following files contain additional information in case things (like mono) do not work as expected:
|
•
|
monoOut.txt: Wrapper mono call standard output (contains command calling the workflow and anything that WorkflowLog.txt does not catch). |
|