Viewing Data | Viewing Run Data | View Indexing QC Results

View Indexing QC Results

Available only for indexed runs, the Indexing QC page provides indexing QC results for the run. View unexpected results for a sample, or confirm that all indexed samples are properly represented.

The first table summarizes the indexing performance for the selected lane. Data on the frequency of an index is provided in the second table and the graph.

Table 3   First Table - Index Performance Summary

Column

Description

Total Reads

Total number of reads.

PF Reads

Total number of clusters passing filter.

% Reads Identified (PF)

Percentage of clusters passing filter that are assigned to an index.

CV

Coefficient of variation for the number of counts across all indexes.

Min

Lowest representation for any index.

Max

Highest representation for any index.

Table 4   Second Table - Index Frequency

Column

Description

Index Number

A unique number BaseSpace assigns to each index for display purposes.

Sample ID

The sample ID assigned to an index in the sample sheet.

Project

The project assigned to an index in the sample sheet.

Index 1 (i7)

The sequence for the first index read.

Index 2 (i5)

The sequence for the second index read.

% Reads Identified (PF)

Percentage of clusters passing filter that are assigned to the index.

To access the Indexing QC page:

1 Click Runs.
2 Click the run name to open the Run Summary page.
3 In the Indexing QC pane, click view all.
4 Click the Lane drop-down arrow to view data for each lane.