BCL to FASTQ Conversion with Minimal Settings

This example shows how to use DRAGEN to process Illumina BCL format files.

The BCL directory used in the example is not included in the example data package. Replace /mnt/san/131022_hsxten008_0123_FC543 with your own BCL directory.

•

Enter the following input:

dragen --bcl-conversion-only=true \
--bcl-input-directory /mnt/san/131022_hsxten008_0123_FC543 \
-- output-directory /staging/examples/

•

Or run /opt/edico/examples/bcl_in_fastq_out.sh.