Read Trimming Settings

Use the following options to configure read trimming:

•

--read-trimmers—To enable Poly-G trimming, set to polyg. To disable Poly-G trimming, set to none. During mapping, artifacts are removed from all reads. Reads are mapped accordingly.

•

--soft-read-trimmers—To enable soft Poly-G trimming, set to polyg. To disable Poly-G trimming, set to none. During mapping, reads are aligned as if they had been trimmed. No bases are removed from the reads. Soft-trimming is enabled by default.