Versions
The following components are used in the RNA-Seq Alignment App.
Software |
Version |
---|---|
Illumina Secondary Analysis Software |
3.18.18.9+master |
Bowtie (Aligner) |
0.12.9 |
STAR (Aligner) |
2.6.1a |
Strelka Variant Caller |
2.9.9 |
Manta Structural Variant Caller |
1.4.0 |
Illumina Annotation Engine (Variant Annotator) |
2.0.11 |
Salmon |
0.11.2 |
SAMtools |
0.1.20 |
Tabix |
0.2.5 |
gffread |
2.2.1 |
bedGraphToBigWig |
302.1.0 |