Versions
The following components are used in the RNA-Seq Alignment App.
|
Software |
Version |
|---|---|
|
Illumina Secondary Analysis Software |
3.18.18.9+master |
|
Bowtie (Aligner) |
0.12.9 |
|
STAR (Aligner) |
2.6.1a |
|
Strelka Variant Caller |
2.9.9 |
|
Manta Structural Variant Caller |
1.4.0 |
|
Illumina Annotation Engine (Variant Annotator) |
2.0.11 |
|
Salmon |
0.11.2 |
|
SAMtools |
0.1.20 |
|
Tabix |
0.2.5 |
|
gffread |
2.2.1 |
|
bedGraphToBigWig |
302.1.0 |