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Folders

This section describes the content of each output folder generated during a DNA sample analysis.

Alignment —Contains per-library BAM and index files from indel realignment.
Annotation — Contains a JSON file with annotations of the sample from the Illumina Annotation Engine.
CNV
Fold Change File —Tab-delimited file containing the gene name, fold change, and Q-score for amplification for each of the 59 amplification genes targeted by the TruSight Tumor 170 v1.0 panel.
Normalized Bin Count File —Tab-delimited file containing the normalized bin count for each genomic region of interest used for amplification calling, and metadata for each region.
Raw Bin Count File —Tab-delimited file containing the raw bin count for each genomic region of interest used for amplification calling, and metadata for each region.
Logs
Logs from each step of the DNA analysis pipeline.
Analysis log documenting the steps executed in the analysis pipeline.

For Research Use Only. Not for use in diagnostic procedures. 

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