Manifest Files
A manifest file is required input for the Enrichment app. The manifest is a tab-delimited text (*.txt) file that specifies the names and locations of targeted reference regions. The main section of the manifest file is the Regions section and contains the following data columns:
|
Column |
Description |
|---|---|
|
Name |
Unique user-specified name for the target |
|
Chromosome |
Chromosome location (eg, chr10, chr5, etc.) |
|
Start |
1-based index for the start position of the target |
|
Stop |
1-based index for the stop position of the target |
|
Upstream Probe Length |
The length of the upstream probe. For the Enrichment app, this should be set to 0. |
|
Downstream Probe Length |
The length of the downstream probe. For the Enrichment app, this should be set to 0. |
For a manifest file template for the Enrichment app, visit the Downloads section of the BaseSpace Sequence Hub support page on the Illumina website.