Sample Group Comparison Summary
Under Differential expression between sample groups, you can view pairwise differential expression between all pairs of sample groups. Select the comparison for display in the drop-down menu. You can view the following metrics:
• | The Normalized read count comparison is a scatter plot comparison of the normalized read counts between the two samples. |
• | The Differential expression results table provides a comparison between the two sample groups per gene or transcript. |
Statistic |
Definition |
---|---|
Target ID |
Unique ID for each amplicon |
Target Type |
The type of amplicon |
Gene |
Gene targeted by assay |
Transcript |
Transcript targeted by assay |
Exons |
Left and right exons of targeted region (if available) |
Normalized Count ([Control Group], [Comparison Group]) |
Averaged and normalized counts per million across samples in [Control Group] and [Comparison Group], respectively |
Log Ratio |
Log ratio of Normalized Count ([Comparison Group]) to Normalized Count ([Control Group]) |
p-val |
P-value of differential expression between comparison and control groups |
q-val |
Q-value of differential expression between comparison and control groups |