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Versions

The RNA Amplicon app uses the following components.

Software

Version

RNA Amplicon (BaseSpace Workflow)

2.0.0

RNA Amplicon Workflow

1.10.12.950+master

BWA-MEM Aligner

0.7.12-r1039

Scipy

0.17.1

Pandas

0.18.1

BamMetrics

0.0.19

PUMA Metrics

1.1.2.0

SAMtools

1.2

Python

2.7.11

R

3.1.2

DESeq2

1.6.3