Differential Expression Section
The Differential Expression section consists of one table for each pair of samples. The information in this section is based on DESeq2 results and information in the input manifest. Each table has the following fields.
|
Column Heading |
Description |
|
Gene Name |
The name of the gene. |
|
Amplicon ID |
The amplicon identifier constructed from the gene name, transcript ID, left exon, right exon, and assay ID. |
|
|
The unique identifier for the |
|
Control Group |
The control sample group. |
|
Comparison Group |
The comparison sample group. |
|
Control Raw Mean Count |
The mean of counts for control samples. |
|
Comparison Raw Mean Count |
The mean of counts for comparison samples. |
|
Control Normalized Mean Count |
The control raw mean count with library size normalization. |
|
Comparison Normalized Mean Count |
The comparison raw mean count with library size normalization. |
|
Fold Change |
The ratio of |
|
Log2(Fold Change) |
The log |
|
P-value |
The statistical significance of the differential expression. |
|
Q-value |
The p-value adjusted for false discovery rate (FDR). |
|
Transcript |
Transcript targeted by assay. |
|
Exons |
Left and right exons of targeted region (if available). |
|
Target Type |
The type of amplicon. |