UMI Error Correction Report
The UMI Error Correction Report generated for each sample contains the following sections and information.
• | Title: UMI Error Correction Report |
• | Analysis Info |
• | Analysis Folder |
• | Product Version |
• | Product Label |
• | Report Generation Time |
• | Software Versions |
• | UMI Pipeline Version |
• | Mono Version |
• | BWA Version |
• | SAMtools Version |
• | ReCo Version |
• | Stitcher Version |
• | Dotnet Core Version |
• | Analysis Runtime |
• | Alignment Step |
• | Read Collapsing Step |
• | Stitcher Step |
• | Total Runtime |
• | Resource Information |
• | Genome and Manifest Files |
• | File Type, Checksum (md5) and File Path |
Metric |
Recommended Thresholds* using TruSight Tumor 170 Workflow |
---|---|
Mean Family Depth |
≥ 10 |
Median Target Coverage |
≥ 954 |
Noise Allele Frequency |
≤ 7e-5 |
For more information on recommended thresholds, see Frequently Asked Questions |
*Thresholds are derived from cfDNA inputs. Sheared gDNA inputs may not meet these thresholds.