Analysis Output
| 1. | When analysis is complete, select the Projects tab in the BaseSpace Sequence Hub Navigation Bar. |
| 2. | Select the project where the app results are stored, and then select the analysis. |
| 3. | Select one of the following folders to view the analysis output: |
| • | ANALYSIS INFO—General Information about the analysis session, including the log files. |
| • | INPUTS—The samples and settings specific for the analysis session. |
| • | OUTPUT FILES—Output files for the sample, where SampleID is the sample name provided in the sample sheet. |
<SampleID> Folder Per Sample
| • | Alignment Folder |
| • | <SampleID>.aligned.bam |
| • | <SampleID>.aligned.bam.bai |
| • | CollapsedReads Folder |
| • | <SampleID>.collapsed.bam |
| • | <SampleID>.collapsed.bam.bai |
| • | <SampleID>_metrics.json (intermediate file) |
| • | Logs Folder |
| • | Alignment Folder |
| • | CollapsedReads Folder |
| • | Stitched Folder |
| • | Analysis Log |
| • | Parameters Override File |
| • | Report |
| • | UMI_Error_Correction_Report<Date><Time>.csv |
| • | Stitched |
| • | <SampleID>.error.txt (intermediate file) |
| • | <SampleID>.nosieAF.json (intermediate file) |
| • | <SampleID>.stitched.bam (intermediate file) |
| • | <SampleID>.stitched.bam.bai (intermediate file) |