Sample Metrics
|
Metric Name |
Description |
|---|---|
|
Percent Reads With Usable UMIs |
The percentage of reads with usable UMIs. |
|
Percent Duplex Families |
The percentage of the total number of families that are duplex families. |
|
Percent Families Collapsed |
The percentage of the total number of families that are collapsed. |
|
CV UMI Coverage |
The coefficient of variation of the number of families associated with each UMI. |
|
Percent Families Depth >= 5 |
The number of families with greater than or equal to 5 supporting reads. |
|
Mean Family Depth |
Average number of fragments (paired reads) in a family before UMI collapsing. |
|
Mean Family Depth Meets Threshold |
Mean Family Depth is greater than or equal to 10 (Derived from ctDNA with TruSight Tumor 170 Workflow). |
|
Median Target Coverage |
Median Target Coverage across all base positions. |
|
Median Target Coverage Meets Threshold |
Median Target Coverage is greater than or equal to 954 (Derived from ctDNA with TruSight Tumor 170 Workflow). |
|
CV Median Target Coverage |
Coefficient of Variation of the Median Target Coverage across all base positions. |
|
Bases with >= 1000x Coverage (%) |
Percentage of positions with coverage greater than 1000. |
|
Bases with >= 1500x Coverage (%) |
Percentage of positions with coverage greater than 1500. |
|
Bases with >= 2000x Coverage (%) |
Percentage of positions with coverage greater than 2000. |
|
Noise AF/Error Rate |
Noise Allele Frequency/Error Rate. Average of all allele frequency values between 0 and 0.05, excluding loci overlapping with known germline mutations from 1000 genome data set. |
|
Noise AF/Error Rate Meets Threshold |
Noise Allele Frequency/Error Rate is less than or equal to 7e-5 (Derived from ctDNA with TruSight Tumor 170 Workflow). |