Clear a QC Warning

Modify a case to correct subject information or FASTQ data, and then resubmit the case to perform secondary analysis and QC using the amended data.

Correct errors in your subject data, such as mismatches in reported sex or pedigree by amending the subject data or removing the subject from the case. Add FASTQ files to increase coverage or use the CLI tool to remove failed files and then link the case to the new FASTQ files.

The audit log records the time and user name associated with the case amendment.

1.

From the QC Metrics tab, select Modify Case.

2.

[Optional] If you are replacing FASTQ data, use the Command-Line Interface to delete FASTQ files you want to exclude from the case.

3.

Select Edit Subject Info, and then perform any of the following actions.

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Link a new FASTQ file to a subject.

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Remove a subject.

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Edit subject details.

4.

Select Submit.

The case is submitted for processing.

Override a QC Warning to accept QC-failed sample data and proceed to interpretation.

1.

From the QC Metrics tab, select Override Warning.

The sample status is changed to QC Override and the case status is changed to Ready for Interpretation.