Alignment Summary

Table 4 Sample Information
Statistic	Definition
Sample ID	Sample ID from input
Total PF Reads	Total number of Pass Filter reads
Percent Q30 Bases	Percentage of bases that has a quality ≥ 30 among all PF bases

Table 5 Read Level Statistics
Statistic	Definition
Total Aligned Reads	Total number of aligned reads (after passing filter)
Percent Aligned Reads	Percentage of aligned reads (after passing filter)

Table 6 Base Level Statistics
Statistic	Definition
Percent Q30	The percentage of bases with a quality score ≥ 30.
Total Aligned Bases	Total number of aligned bases.
Percent Aligned Bases	Percentage of aligned bases.
Percent Mismatches	Percentage of mismatches among all aligned bases.

For Research Use Only. Not for use in diagnostic procedures.