MiSeq Software Downloads

For full installation instructions, see the installation notes included with the updater download package. Reference Genome v1.1 is compatible with Local Run Manager for MiSeq. Some Local Run Manager modules may require a reference genome update. See the module instructions on the Local Run Manager support page for information on updating the reference genome.

For upgrade information, see the upgrade guide notes included with the updater download package.

Note: The software updater can also be installed in the RUO drive of MiSeqDx instruments with dual boot configuration. If you are not sure if your instrument has dual boot configuration, contact Illumina Tech Support.

Installer files and release notes for MiSeq Reporter.

Release notes for the MiSeq Control Software (MCS) and related software components, including the MiSeq Reporter.