| Category | Application | Library Prep Kit | 
|---|---|---|
| Targeted Sequencing | TruSight Tumor 15 | TruSight Tumor 15 | 
| TruSeq Amplicon | TruSeq Amplicon TruSight Myeloid | |
| PCR Amplicon | Nextera XT Nextera XT v2 Nextera | |
| PCR Amplicon | Nextera XT Nextera XT v2 Nextera | |
| PCR Amplicon | Nextera XT Nextera XT v2 Nextera | |
| Metagenomics 16S rRNA | Nextera XT Nextera XT v2 Nextera TruSeq HT TruSeq LT | |
| Enrichment | TruSight Enrichment Nextera Rapid Capture Enrichment | |
| Clone Checking | Nextera XT Nextera XT v2 Nextera TruSeq HT TruSeq LT | |
| Amplicon - DS TruSight Tumor 26 | TruSight Tumor 26 | |
| Small Genome Sequencing | Resequencing | TruSeq LT TruSeq HT Nextera Nextera XT Nextera XT v2 Nextera Mate Pair | 
| Plasmids | TruSeq LT TruSeq HT Nextera XT Nextera XT v2 Nextera | |
| Assembly | Nextera Nextera Mate Pair Nextera XT Nextera XT v2 TruSeq HT TruSeq LT | |
| RNA Sequencing | Targeted RNA | Targeted RNA Expression | 
| Small RNA | TruSeq Small RNA | |
| RNA-Seq | TruSeq HT TruSeq LT TruSight RNA Pan-Cancer (Select TruSeq LT) | |
| Other | TruSight HLA | Nextera XT v2 Nextera XT v2 Set A, B, C, D | 
| Library QC | Nextera Nextera Mate Pair Nextera XT Nextera XT v2 TruSeq HT TruSeq LT | |
| FASTQ Only | Nextera Nextera Mate Pair Nextera Rapid Capture Enrichment Nextera XT Nextera XT v2 TruSeq Amplicon TruSeq Small RNA TruSeq HT TruSeq LT TruSight Enrichment | |
| ChIP-Seq | TruSeq LT | 
| Application | Library Prep Kit | 
|---|---|
| Human Genome Resequencing | Nextera Nextera Mate Pair Nextera XT Nextera XT v2 Nextera XT v2 Set A, B, C, D TruSeq HT TruSeq LT | 
| HiSeq FASTQ only | Nextera Nextera Mate Pair Nextera Rapid Capture Enrichment Nextera XT Nextera XT v2 Nextera XT v2 Set A, B, C, D TruSeq Amplicon TruSeq Small RNA TruSeq HT TruSeq LT TruSight Enrichment TruSeq Synthetic Long-Read DNA TruSight Myeloid (Select TruSeq Amplicon) TruSight RNA Pan-Cancer (Select TruSeq LT) | 
| HiSeq Enrichment | Nextera Rapid Capture Enrichment TruSight Enrichment | 
| HiSeq CASAVA | Nextera Nextera Mate Pair Nextera XT Nextera XT v2 Nextera XT v2 Set A, B, C, D TruSeq Amplicon TruSeq Small RNA TruSeq HT TruSeq LT TruSight Enrichment | 
| Application | Library Prep Kit | 
|---|---|
| NextSeq FASTQ only | Nextera Nextera Mate pairNextera Rapid Capture Enrichment Nextera XT Nextera XT v2 Nextera XT v2 Set A, B, C, D TruSeq Amplicon TruSeq Small RNA TruSeq HT TruSeq LT TruSight Enrichment TruSight Myeloid (Select TruSeq Amplicon) TruSight RNA Pan-Cancer (Select TruSeq LT) | 
| Application | Library Prep Kit | 
|---|---|
| N/A | TruSeq Stranded mRNA TruSeq DNA |