Pindel Analysis Methods
The DNA + RNA Amplicon App uses a pattern growth approach to detect breakpoints of large deletions (as large as 10kb) and medium-sized insertions from paired-end reads.
For more information, see the following resources:
| • | gmt.genome.wustl.edu/packages/pindel/ |
| • | Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads |
Pindel Workflow
