Get Started

• Introduction
• Reference Genomes
• Workflow Requirements
• Workflow Diagram

Parameters

• Set Analysis Parameters

Analysis Methods

• DNA Analysis Methods
• RNA Analysis Methods
• Pindel Analysis Methods
• OncoCNV Analysis Methods

Output

• View Analysis Output
• Summary
• Log Files
• Reports

Output Files

• Output Files
• BAM File Format
• VCF File Format
• Genome VCF Files
• Sample ID Files
• Summary File