Analysis Methods

Analysis Methods

The mtDNA Variant Processor App uses the following methods to analyze the sequencing data. See Workflow .

Illumina Secondary Analysis Software (Isas)
BAM-MEM1

1 Li H. (2013) Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv: 1303.3997v1[q-bio.GN].

BWA-MEM