Summary Plots

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Plot Name	Description
Insert Length Distribution	The plot summarizes the insert length distribution for paired-end reads. The 3 vertical lines of the box represent the quartiles and the whiskers represent the 5^th and 95^th percentiles. The insert length for this box plot is capped at 600 bp.
Alignment Distribution	The app calculates the alignment information based on the on-target genes. The plot shows the percentage for the color-coded genomic regions, which include coding, UTR, intron, and nontargeted or intergenic. If a panel is selected, the app reports "nontargeted."
Transcript Coverage	The app calculates the alignment information based on the on-target genes. The plot shows the transcript coverage position as reported by the CollectRnaSeqMetrics utility from Picard tools. A vertical bar shows the relative coverage at the position in each row. The numbers between 0 and 100 represents the normalized position along a transcript.

Plot Name

Description

Insert Length Distribution

The plot summarizes the insert length distribution for paired-end reads. The 3 vertical lines of the box represent the quartiles and the whiskers represent the 5^th and 95^th percentiles. The insert length for this box plot is capped at 600 bp.

Alignment Distribution

The app calculates the alignment information based on the on-target genes.

The plot shows the percentage for the color-coded genomic regions, which include coding, UTR, intron, and nontargeted or intergenic. If a panel is selected, the app reports "nontargeted."

Transcript Coverage

The app calculates the alignment information based on the on-target genes.

The plot shows the transcript coverage position as reported by the CollectRnaSeqMetrics utility from Picard tools. A vertical bar shows the relative coverage at the position in each row. The numbers between 0 and 100 represents the normalized position along a transcript.

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Summary Plots