Alignment Metrics
|
Statistic |
Definition |
|---|---|
|
Total Number of Reads |
Total number of reads passing filter for this sample. |
|
Read Length (bp) |
Length of reads |
|
Abundant Reads (% Total) |
Percentage of reads that match to abundant sequences, such as mitochondrial and ribosomal sequences. |
|
Total Number of Filtered Reads |
Total number of reads filtered out at the abundant sequence filtering step. |
|
Aligned Reads (% Passing Reads) |
Percentage of reads passing abundant sequence filters that aligned to the reference. |
|
Reads with Spliced Alignment (% Aligned Reads) |
Percentage of aligned reads with a spliced alignment. |
|
Reads Aligned at Multiple Loci (% Aligned Reads) |
Percentage of aligned reads to multiple loci. |