General Settings
General settings determine how variants are annotated and displayed.
|
1.
|
Select the Settings  icon or select Settings from the Account menu drop-down list. |
|
2.
|
Select the General tab. |
|
3.
|
Select a Transcript Filtering option to specify which annotations show in the variant grid. |
|
•
|
Selected only—Shows only the annotation of the variant corresponding to the selected transcript. |
|
•
|
All Transcripts—Shows all annotations for all transcripts. This option adds a drop-down arrow to the Variants table that shows and hides all transcript annotations for the variant. |
Note
All transcripts are annotated. The Transcripts Filtering setting determines which annotations are shown in the grid.
|
4.
|
[Optional] Enter a value from 0–1 in the Reciprocal Overlap Threshold field to specify the minimum overlap threshold required for associations to be considered similar. |
The change is applied when a case is imported or reanalyzed.
|
5.
|
[Optional] Select IGV Preferences options to specify the tracks to include. |
|
•
|
DGV—Shows variants annotated in the Database of Genomic Variants (DGV). |
|
•
|
ISCA—Shows variants in the International Standards for Cytogenomic Arrays (ISCA) database. |