Get Started

• Import Files From BaseSpace Sequence Hub
• Import Files From a Network or Local Directory
• Set Up a Case
• Import Sample Metadata Manifest
• Settings
• Create Region Lists
• Create Gene Lists
• Create Custom Annotations

Somatic Workflow

• Import Variant Call Files
• Create Sample Metadata Manifest
• Set Up a Case
• Apply Filters
• View Variant Details
• Visualize Sample Data
• Add Interpretation for Oncology Analysis
• Add Association
• Create a Report
• Oncology Report Overview

Germline Workflow

• Import Variant Call Files
• Create Sample Metadata Manifest
• Set Up a Case
• Apply Filters
• View Variant Details
• Visualize Sample Data
• Add Interpretation for Germline Analysis
• Add Association
• Create a Report
• Germline Report Overview

Analyze

• Apply Filters
• Save a Filter Combination
• Apply a Saved Filter
• Variant Grid
• Visualize Sample Data

Manage Cases

• Edit Owner and Status
• Edit Subject Metadata
• Edit Sample Metadata
• Add Family Members to a Case
• Update Multiple Cases
• View Case History
• Delete a Case

Annotate and Curate

• Add Interpretation for Oncology Analysis
• Add Interpretation for Germline Analysis
• View Interpretation History
• Adding Curations
• Import Curation Data
• Add Evidence
• Evidence Types
• Add Association
• Association Types

Manage Accounts

• Manage Workgroups
• Create Workgroups and Assign Administrators
• Add Users
• Change User Access
• Domain Administration
• Usage Reports
• User Management

Generate Reports

• Create a Report
• Germline Report Overview
• Oncology Report Overview
• Create Custom Report Template