Import Associations

You can add case-independent associations in bulk by uploading a formatted *.csv file. Users who are signed in to the workgroup knowledge base can review and edit the imported associations. See Edit an Association.

1.

From the Associations tab of BaseSpace Knowledge Network, select Upload Log.

The Upload Log page displays a list of file uploads.

2.

From the Action menu, select Upload.

3.

In the Upload dialog box, do as follows.

1. Specify the following file parameters.

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Type—The association type.

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Genome Build—The association build. The default selection is GRCh37.

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Annotation Engine—The annotation engine version.

2. [Optional] Select Download .CSV template to save a template file for the selected association type. For information about the template rows, see Input Template for Bulk Curations.
3. Select Select File and navigate to the *.csv file.
4. Select Upload.

The file is added to the upload log. The number of successfully processed associations is listed in the Associations Created column.

4.

To view the associations included in an uploaded file, select View.

The file view lists the associations, row ID, reference ID, and processing status. If the variant upload is not successful, the results column displays the reason for failure.

5.

To view the details of an association, select View from the file list.