Get Started

• Introduction
• Reference Genomes
• Workflow Diagram

Parameters

• Set Analysis Parameters

Analysis Methods

• DNA Mapping and Aligning
• Copy Number Variant Workflow
• Repeat Expansion Detection with Expansion Hunter

Output

• Analysis Output
• Analysis Info
• Log Files
• Analysis Reports

Output Files

• Output Files
• BAM File Format
• VCF File Format
• Genome VCF Files