Copy Number Variant Metrics
Metrics are reported on a per sample level.
| • | Sex Genotyper—The predicted sex of the sample. |
| • | Number of alignment records—The number of alignment records in the sample. |
| • | Bases in reference genome—The number of bases in the reference genome. |
| • | Average alignment coverage over genome—The average alignment coverage across the reference genome. |
| • | Number of filtered records (total)—The number of total filtered records. |
| • | Number of filtered records (duplicates)—The number of duplicated filtered records. |
| • | Number of filtered records (MAPQ)—The number of MAPQ filtered records. |
| • | Number of filtered records (unmapped)—The number of unmapped filtered records. |
| • | Number of target intervals—The number of target intervals in the sample. |
| • | Number of segments—The number of segments in the sample. Applicable only to CNV SLM mode. |
| • | Number of amplifications—The number of amplifications in the sample. Applicable only to CNV SLM mode. |
| • | Number of deletions—The number of deletions in the sample. Applicable only to CNV SLM mode. |
| • | Number of passing amplifications—The number of passing amplifications in the sample. Applicable only to CNV SLM mode. |
| • | Number of passing deletions—The number of passing deletions in the sample. Applicable only to CNV SLM mode. |