Time Metrics

Statistic	Definition
Time loading reference	Time it took to load the reference genome.
Time aligning reads	Time it took to align reads to the reference genome.
Time sorting and marking duplicates	Time it took to sort and mark duplicates in the sample.
Time DRAGStr calibration	Time it took to perform repeat-expansion detection.
Time saving map/align output	Time it took to compute mapping and aligning metrics and generate a report.
Time partial reconfiguration	Time it took to reconfigure partial classifications.
Time processing depth of coverage	Time it took to process the depth of coverage.
Time variant calling	Time it took to perform variant calling on the sample.
Time calculating target counts	Time it took to compute target counts.
Time correcting GC bias	Time it took to perform GC-bias correction.
Time normalizing case sample	Time it took to perform case sample normalization.
Time performing segmentation	Time it took to perform segmentation.
Time generating CNV calls	Time it took to generate copy number variant calls.
Time generating CNV track files	Time it took to generate copy number variant track files.
Time genotyping repeats	Time it took to genotype repeats.
Time structural variant calling	Time it took to perform structural variant calling.
Total runtime	Total time to complete analysis.