The 16S Metagenomics App performs taxonomic classification of 16S rRNA targeted amplication reads.
Designed specifically for dual-strand targeted resequencing assays, the Amplicon DS App aligns reads against the reference specified in the manifest file, and then performs variant analysis.
The BWA Enrichment App aligns reads against the whole genome reference, and then performs variant analysis for regions of interest specified in the manifest file.
Intended for whole-genome sequencing of small genomes, the BWA Whole Genome Sequencing App aligns reads against the specified reference, and then performs variant analysis.
The Enrichment App (formerly known as Isaac Enrichment) analyzes DNA that are enrinched for particular target sequences, aligns reads against the specific reference, and then performs variant analysis for regions of interest specified in the manifest file.
Intended for whole-genome sequencing of small genomes, the Isaac Whole Genome Sequencing App aligns reads against the specified reference, and then performs variant analysis.
The RNA Express App aligns RNA-sequencing reads against specified genes and performs differential expression.
The RNA-Seq Alignment app aligns RNA-sequencing reads against the specific reference, performs variant analysis, gene fusion detection, and novel script assembly using the Cufflinks Assembly & DE App.
The Small RNA App aligns reads against databases for contaminants, mature miRNA, small RNA, and a genomic reference, and then measures abundance of short RNA sequences.
The Targeted RNA App aligns reads specified in the manifest file, quantifies the relative expression of genes and isoforms between samples, and then compares abundance across samples.
The TopHat Alignment and Cufflinks Assembly App aligns RNA-sequencing reads against the specific reference, performs variant analysis, and estimates reference genes and transcript abundance.
The TruSeq Amplicon App aligns reads against the reference specified in the manifest file, and then performs variant analysis.
The TruSeq Long Reads Assembly App generates libraries for long-read sequencing and assembles high-quality synthetic long-read fragments.
The TruSeq Phasing App performs whole human genome phasin and enables the generation of haplotype fragments for allele-specific analysis.
The TruSight Tumor 15 App aligns reads specified in the manifest file, and then reports somatic variants of a set of reference panel genes associated with cancer.
The Tumor Normal detects somatic variants from a matched pair of tumor and normal samples.
TruSeq Nano DNA HT TruSeq DNA PCR-Free HT |
Nextera XT |
Nextera XT |
Nextera Mate Pair |
| Nextera DNA |
TruSeq Nano DNA HT TruSeq DNA PCR-Free HT |
TruSeq Nano DNA HT TruSeq DNA PCR-Free HT |
| Nextera DNA |