Analysis Output | Sample Analysis Reports | Alignment Summary

Alignment Summary

Table 1 Group Sample View
Statistic	Definition
Group Index	Group number.
Sample Group	Sample group as specified in input form.
# Replicates	Number of samples assigned to this sample group.
Total Aligned Reads (R1/R2)	The total count of PF reads aligning for the group (Read 1/Read 2).
Percent Aligned Reads (R1/R2)	Percentage of PF reads aligning for the group (Read 1/Read 2).
Overall Percent Aligned Reads	Percentage of PF reads aligning for the group across both reads 1 and 2.

Table 2 Individual Sample View
Statistic	Definition
Sample Index	Sample number.
Sample Id	Sample identifier.
Sample Group	Sample group as specified in input form.
Total Aligned Reads (R1/R2)	The total count of PF reads aligning for the group (Read 1/Read 2).
Percent Aligned Reads (R1/R2)	Percentage of PF reads aligning for the group (Read 1/Read 2).
Overall Percent Aligned Reads	Percentage of PF reads aligning for the group across both reads 1 and 2.