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Analysis Output | Output Files | RNA Outputs | Files | Splice Variants

Splice Variants VCF

File name: {Sample_ID}_SpliceVariants.vcf

Contains all candidate splice variants targeted by the TruSight Tumor 170 v1.0 panel identified by the RNA analysis pipeline.

The following filters may be applied for each variant call.

Filter Name

Description

LowQ

Splice Variant Score is < the Passing Quality Score threshold value of 1.

PASS

Splice Variant Score is ≥ to the Passing Quality Score threshold value of 1.

Each splice variant is annotated using the Illumina Annotation Engine and the following information is captured in the VCF if available:

• HGNC Gene
• Transcript
• Exons
• Introns
• Canonical
• Consequence

See the headers in the output for more information about each column.

For Research Use Only. Not for use in diagnostic procedures. 

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