You are here:

Set Analysis Parameters

Set Analysis Parameters

1 Open the app from BaseSpace Sequence Hub as follows.
    a Click the Apps tab.
    b Click Tumor Normal.
    c From the drop-down list, select version 4.0.0, and then click Launch.
2 [Optional] In the Analysis Name field, enter an analysis name of your preference.

The default is the app name followed by the date and time the analysis started.

3 Click Save Results To.
4 In the Select Projects dialog box, click a project to store the app results, and then click Select.
5 Click the Reference Genome drop-down arrow, and then select the reference genome.
6 Click an Annotation option, RefSeq or Ensembl, to select which variant annotation database to use.

The default is Ensembl.

7 Click Select AppResult Pairs.
8 In the Select AppResults Pairs dialog box, select the normal and tumor app results you want to analyze, and then click Confirm.
• Sample must be aligned in Whole Genome Sequencing version 6 with the desired reference genome.
• Make sure tumor and normal sample sizes are within the size restrictions, see Workflow Requirements
9 Click Continue to start the analysis.

When analysis is complete, the app updates the status of the app session and sends you a notification via email.

For Research Use Only. Not for use in diagnostic procedures. 

©2017 Illumina, Inc. All rights reserved.