Static Visualizations
The Visualization panel displays two views: Genome View and Mutational Signatures. Mutational Signature plots are optimized for Whole Genome Sequencing workflows and are not generated for all cases.
| • | Genome View—Displays large variants and sequencing depth across the genome, in three plot types: |
| • | Structural Variants—The height of each arc corresponds to the somatic score of the variant. Each SV is classified as deletion (blue), duplication (red), inversion (blue-green), or translocation (yellow). |
| • | Normalized Coverage—The depth of coverage by chromosomal position. Aberrant values indicate copy number variations. Copy number ratios are classified as diploid (black), gains (red), losses (green), or LOH (yellow). |
| • | B-Allele Frequency—Minor allele frequency by chromosomal position. |
| • | Mutational Signature—Displays genome-wide mutational signatures within the sample. The plot shows the distribution of substitutions across the sample with a 3mer context and decomposition of signatures, visualized in a stacked barplot and table with probable associations. If there are not enough single nucleotide variants to generate the mutational signature plot, the plot is not displayed. |