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Coverage by Amplicon Region Plot
The Coverage by Amplicon Region plot shows the number of bases plotted against the amplicon region. It has the following features:
| ▶ | Amplicon regions with coverage values less than the low coverage threshold (0.2 * amplicon mean coverage) are highlighted in red. |
| ▶ | Amplicon regions with coverage values greater than the low coverage threshold (0.2 * amplicon mean coverage) are highlighted in blue. |
| ▶ | The horizontal red line marks the low coverage threshold. |
| ▶ | The orange line marks the moving average of all coverage values. |
Plots detail Amplicon Region overall and Amplicon Region by pool.
Figure Example Coverage by Amplicon Region Plot
Coverage values for each amplicon are detailed in the downloadable Export (CSV) file.