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Small Variants Summary
This table provides metrics about the number of SNVs, deletions, and insertions. Data are first analyzed for each individual pool (Pool A and Pool B). The data are then reconciled for the 2 pools and a consensus call is made for all the called variants.
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Statistic |
Definition |
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Total Passing |
The total number of variants present in the data set that passed the variant quality filters. |
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Percent Found in dbSNP |
100*(Number of variants in dbSNP/Number of variants). The SNVs that were found in the dbSNP are annotated accordingly. |
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Het/Hom Ratio |
Number of heterozygous variants/Number of homozygous variants. |
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Ts/Tv Ratio |
Transition rate of SNVs that pass the quality filters divided by transversion rate of SNVs that pass the quality filters. Transitions are interchanges of purines (A, G) or of pyrimidines (C, T). Transversions are interchanges between purine and pyrimidine bases (for example, A to T). |