Reference Genomes
The following reference genomes are available for alignment:
|
▶
|
Homo sapiens UCSC hg19 (RefSeq & Gencode gene annotations) |
|
▶
|
Homo sapiens UCSC hg38 (RefSeq & Gencode gene annotations) |
The human reference genome is PAR-Masked, which means that the Y chromosome sequence has the Pseudo Autosomal Regions (PAR) masked (set to N) to avoid mismapping of reads in the duplicate regions of sex chromosomes.
|
▶
|
Arabidopsis thaliana Ensembl TAIR10 (Ensembl gene annotation) |
|
▶
|
Bos taurus UCSC bosTau6 (RefSeq gene annotation) |
|
▶
|
Caenorhabditis elegans UCSC ce10 (RefSeq gene annotation) |
|
▶
|
Danio rerio UCSC danRer7 (RefSeq gene annotation) |
|
▶
|
Drosophila melanogaster UCSC dm3 (RefSeq gene annotation) |
|
▶
|
Gallus gallus UCSC galGal4 (RefSeq gene annotation) |
|
▶
|
Mus musculus UCSC mm9 (RefSeq gene annotation) |
|
▶
|
Mus musculus UCSC mm10 (RefSeq gene annotation) |
|
▶
|
Oryza sativa japonica Ensembl IRGSP-1.0 (Ensembl gene annotation) |
|
▶
|
Rattus norvegicus UCSC rn5 (RefSeq gene annotation) |
|
▶
|
Saccharomyces cerevisiae Ensembl R64-1-1 (Ensembl gene annotation) |
|
▶
|
Sus scrofa UCSC susScr3 (RefSeq gene annotation) |
|
▶
|
Zea mays Ensembl AGPv3 (Ensembl gene annotation) |
RNA-Seq Alignment v1.0 Online Help