Fragments Per Kilobase of sequence per Million mapped reads (FPKM) normalizes the number of aligned reads by the size of the sequence feature and the total number of mapped reads.
In each output directory, this app creates the following output files:
|▶||genes.fpkm_tracking—Quantifies the expression of genes specified in the GTF annotation file.|
|▶||isoforms.fpkm_tracking—Quantifies the expression of transcripts specified in the GTF annotation file.|
RNA-Seq Alignment v1.0 Online Help